.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "auto_examples/comparison/compute_mp3.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_auto_examples_comparison_compute_mp3.py>`
        to download the full example code

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_auto_examples_comparison_compute_mp3.py:


Comparing two trees by MP3
--------------------------

This example shows how to compare/measure two inferred genotype data (trees).

.. GENERATED FROM PYTHON SOURCE LINES 7-12

.. code-block:: Python


    import scphylo as scp

    # sphinx_gallery_thumbnail_path = "_static/thumbnails/mp3.png"








.. GENERATED FROM PYTHON SOURCE LINES 13-14

First, we load two binary test single-cell genotype data.

.. GENERATED FROM PYTHON SOURCE LINES 14-21

.. code-block:: Python

    grnd = scp.io.read(
        scp.ul.get_file("scphylo.datasets/test/fp_0-fn_0-na_0.ground.CFMatrix")
    )
    sol = scp.io.read(
        scp.ul.get_file("scphylo.datasets/test/fp_1-fn_0.1-na_0.bnb.CFMatrix")
    )








.. GENERATED FROM PYTHON SOURCE LINES 22-23

Calculating the Triplet-based similarity score (MP3).

.. GENERATED FROM PYTHON SOURCE LINES 23-24

.. code-block:: Python

    scp.tl.mp3(grnd, sol)




.. rst-class:: sphx-glr-script-out

 .. code-block:: none


    0.6582958295829583




.. rst-class:: sphx-glr-timing

   **Total running time of the script:** (0 minutes 6.511 seconds)

**Estimated memory usage:**  9 MB


.. _sphx_glr_download_auto_examples_comparison_compute_mp3.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: compute_mp3.ipynb <compute_mp3.ipynb>`

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: compute_mp3.py <compute_mp3.py>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_