.. _sphx_glr_auto_examples_comparison:

Comparison
^^^^^^^^^^

Below is a gallery of examples for comparing two phylogenetic trees using available
tools in :mod:`scphylo.tl`.



.. raw:: html

    <div class="sphx-glr-thumbnails">


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example shows how to compare/measure two inferred genotype data (trees).">

.. only:: html

  .. image:: /auto_examples/comparison/images/thumb/sphx_glr_compute_ad_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_comparison_compute_ad.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Comparing two trees by Ancestor-Descendent</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example shows how to compare/measure two inferred genotype data (trees).">

.. only:: html

  .. image:: /auto_examples/comparison/images/thumb/sphx_glr_compute_caset_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_comparison_compute_caset.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Comparing two trees by CASet</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example shows how to compare/measure two inferred genotype data (trees).">

.. only:: html

  .. image:: /auto_examples/comparison/images/thumb/sphx_glr_compute_disc_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_comparison_compute_disc.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Comparing two trees by DISC</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example shows how to compare/measure two inferred genotype data (trees).">

.. only:: html

  .. image:: /auto_examples/comparison/images/thumb/sphx_glr_compute_dl_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_comparison_compute_dl.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Comparing two trees by Different-Lineage</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example shows how to compare/measure two inferred genotype data (trees).">

.. only:: html

  .. image:: /auto_examples/comparison/images/thumb/sphx_glr_compute_gs_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_comparison_compute_gs.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Comparing two trees by Genotype-Similarity</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example shows how to compare/measure two inferred genotype data (trees).">

.. only:: html

  .. image:: /auto_examples/comparison/images/thumb/sphx_glr_compute_mltd_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_comparison_compute_mltd.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Comparing two trees by MLTD</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example shows how to compare/measure two inferred genotype data (trees).">

.. only:: html

  .. image:: /auto_examples/comparison/images/thumb/sphx_glr_compute_mp3_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_comparison_compute_mp3.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Comparing two trees by MP3</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example shows how to compare/measure two inferred genotype data (trees).">

.. only:: html

  .. image:: /auto_examples/comparison/images/thumb/sphx_glr_compute_rf_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_comparison_compute_rf.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Comparing two trees by Robinson-Foulds</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example shows how to compare/measure two inferred genotype data (trees).">

.. only:: html

  .. image:: /auto_examples/comparison/images/thumb/sphx_glr_compute_tpted_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_comparison_compute_tpted.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Comparing two trees by TPTED</div>
    </div>


.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/comparison/compute_ad
   /auto_examples/comparison/compute_caset
   /auto_examples/comparison/compute_disc
   /auto_examples/comparison/compute_dl
   /auto_examples/comparison/compute_gs
   /auto_examples/comparison/compute_mltd
   /auto_examples/comparison/compute_mp3
   /auto_examples/comparison/compute_rf
   /auto_examples/comparison/compute_tpted