.. _sphx_glr_auto_examples_reconstruction:
Reconstruction
^^^^^^^^^^^^^^
Below is a gallery of examples for reconstructing tumor phylogeny using available tools
in :mod:`scphylo.tl`.
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.. only:: html
.. image:: /auto_examples/reconstruction/images/thumb/sphx_glr_compute_bnb_thumb.png
:alt:
:ref:`sphx_glr_auto_examples_reconstruction_compute_bnb.py`
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Reconstruct tree by PhISCS-BnB
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.. only:: html
.. image:: /auto_examples/reconstruction/images/thumb/sphx_glr_compute_booster_thumb.png
:alt:
:ref:`sphx_glr_auto_examples_reconstruction_compute_booster.py`
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Reconstruct tree by Trisicell-Boost
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.. only:: html
.. image:: /auto_examples/reconstruction/images/thumb/sphx_glr_compute_gpps_thumb.png
:alt:
:ref:`sphx_glr_auto_examples_reconstruction_compute_gpps.py`
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Reconstruct tree by gpps
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.. only:: html
.. image:: /auto_examples/reconstruction/images/thumb/sphx_glr_compute_onconem_thumb.png
:alt:
:ref:`sphx_glr_auto_examples_reconstruction_compute_onconem.py`
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Reconstruct tree by OncoNEM
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.. only:: html
.. image:: /auto_examples/reconstruction/images/thumb/sphx_glr_compute_phiscs_thumb.png
:alt:
:ref:`sphx_glr_auto_examples_reconstruction_compute_phiscs.py`
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Reconstruct tree by PhISCS
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.. only:: html
.. image:: /auto_examples/reconstruction/images/thumb/sphx_glr_compute_scistree_thumb.png
:alt:
:ref:`sphx_glr_auto_examples_reconstruction_compute_scistree.py`
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Reconstruct tree by ScisTree
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.. only:: html
.. image:: /auto_examples/reconstruction/images/thumb/sphx_glr_compute_scite_thumb.png
:alt:
:ref:`sphx_glr_auto_examples_reconstruction_compute_scite.py`
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Reconstruct tree by SCITE
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.. only:: html
.. image:: /auto_examples/reconstruction/images/thumb/sphx_glr_compute_siclonefit_thumb.png
:alt:
:ref:`sphx_glr_auto_examples_reconstruction_compute_siclonefit.py`
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Reconstruct tree by SiCloneFit
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.. only:: html
.. image:: /auto_examples/reconstruction/images/thumb/sphx_glr_compute_sphyr_thumb.png
:alt:
:ref:`sphx_glr_auto_examples_reconstruction_compute_sphyr.py`
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Reconstruct tree by SPhyR
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.. toctree::
:hidden:
/auto_examples/reconstruction/compute_bnb
/auto_examples/reconstruction/compute_booster
/auto_examples/reconstruction/compute_gpps
/auto_examples/reconstruction/compute_onconem
/auto_examples/reconstruction/compute_phiscs
/auto_examples/reconstruction/compute_scistree
/auto_examples/reconstruction/compute_scite
/auto_examples/reconstruction/compute_siclonefit
/auto_examples/reconstruction/compute_sphyr