Documentation

scphylo-tools: a python toolkit for single-cell tumor phylogenetic analysis

scphylo-tools is a comprehensive Python toolkit designed for single-cell tumor phylogenetic analysis. It integrates efficient implementations of state-of-the-art methods to infer evolutionary trees from single-cell genotype data.

Features

• Phylogenetic Inference: Wrappers and implementations for state-of-the-art inference methods.

• API & CLI: Provides a Python API as well as command-line tools.

• Visualization: Built-in visualization tools.

• Datasets: Access to available datasets.

• Ease of Use: A unified Python interface for complex phylogenetic workflows.

Installation

Install the package via pip:

pip install scphylo-tools

Documentation

Detailed documentation and tutorials are available at Read the Docs.