Installation

scPhylo-tools requires Python 3.11 or later.

Using PyPI

To install scphylo-tools from PyPI, run:

pip install scphylo-tools

If you encounter a Permission denied error, use pip install scphylo-tools --user instead.

Development Version

To work with the latest development version, install directly from GitHub:

git clone https://github.com/faridrashidi/scphylo-tools
cd scphylo-tools
make install-dev

Your contributions to improve scPhylo-tools are highly appreciated! Please refer to our contributing guide.

If you encounter any issues, please feel free to open a GitHub issue.