Examples#
This section contains various code snippets that demonstrate scphylo
’s
usage.
Reconstruction#
Below is a gallery of examples for reconstructing tumor phylogeny using available tools
in scphylo.tl
.
Reconstruct tree by PhISCS-BnB
Reconstruct tree by Trisicell-Boost
Reconstruct tree by SiCloneFit
Comparison#
Below is a gallery of examples for comparing two phylogenetic trees using available
tools in scphylo.tl
.
Comparing two trees by Ancestor-Descendent
Comparing two trees by Different-Lineage
Comparing two trees by Genotype-Similarity
Comparing two trees by Robinson-Foulds
Assessment#
Below is a gallery of examples for assessing the inferred phylogenetic tree using
functions in scphylo.tl
.
Reconstruct tree by Trisicell-PartF
Visualization#
Below is a gallery of examples for visualizing the inferred phylogenetic tree using
functions in scphylo.pl
.
Visualizing a tree in clonal format
Visualizing a tree in dendrogram format