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  • Installation
  • API
  • CLI
  • References
  • Examples
  • GitHub
  • Twitter

Section Navigation

  • Reconstruction
    • Reconstruct tree by PhISCS-BnB
    • Reconstruct tree by Trisicell-Boost
    • Reconstruct tree by gpps
    • Reconstruct tree by OncoNEM
    • Reconstruct tree by PhISCS
    • Reconstruct tree by ScisTree
    • Reconstruct tree by SCITE
    • Reconstruct tree by SiCloneFit
    • Reconstruct tree by SPhyR
  • Comparison
    • Comparing two trees by Ancestor-Descendent
    • Comparing two trees by CASet
    • Comparing two trees by DISC
    • Comparing two trees by Different-Lineage
    • Comparing two trees by Genotype-Similarity
    • Comparing two trees by MLTD
    • Comparing two trees by MP3
    • Comparing two trees by Robinson-Foulds
    • Comparing two trees by TPTED
  • Assessment
    • Reconstruct tree by Trisicell-PartF
  • Visualization
    • Visualizing a tree in clonal format
    • Visualizing a tree in dendrogram format
  • Examples
  • Assessment

Assessment#

Below is a gallery of examples for assessing the inferred phylogenetic tree using functions in scphylo.tl.

Reconstruct tree by Trisicell-PartF

Reconstruct tree by Trisicell-PartF

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Comparing two trees by TPTED

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Reconstruct tree by Trisicell-PartF

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