scphylo.tl.caset#

scphylo.tl.caset(df_grnd, df_sol)[source]#

Commonly Ancestor Sets score.

This measure was introduced in [CASet_DISC].

Parameters:
  • df_grnd (pandas.DataFrame) – The first genotype matrix (e.g. ground truth) This matrix must be conflict-free.

  • df_sol (pandas.DataFrame) – The second genotype matrix (e.g. solution/inferred) This matrix must be conflict-free.

Returns:

Similarity out of one.

Return type:

float

Examples#

Comparing two trees by CASet

Comparing two trees by CASet