scphylo.tl.gs#

scphylo.tl.gs(df_grnd, df_sol)[source]#

Genotype-similarity accuracy.

This measure was introduced in [SiCloneFit].

Parameters:
  • df_grnd (pandas.DataFrame) – The first genotype matrix (e.g. ground truth) This matrix must be conflict-free.

  • df_sol (pandas.DataFrame) – The second genotype matrix (e.g. solution/inferred) This matrix must be conflict-free.

Returns:

Similarity out of one.

Return type:

float

Examples#

Comparing two trees by Genotype-Similarity

Comparing two trees by Genotype-Similarity