scphylo.datasets.colorectal2#
- scphylo.datasets.colorectal2(readcount=False)[source]#
Human Colorectal Cancer (Patient 2).
This dataset was introduced in [Leung_2017] and was used in:
[PhISCS] Figure 7.
[B-SCITE] Figure 8b.
[SiCloneFit] Figure 4.
[SCARLET] Figure 4.
The size is n_cells × n_muts = 78 × 25
- Parameters
readcount¶ (
str) – Return the readcount information of the data.- Returns
An anndata in which .X is the input noisy.
- .layers[‘solution_fig7a’] is the solution presented in Figure 7a of
PhISCS paper.
- .layers[‘solution_fig7b’] is the solution presented in Figure 7b of
PhISCS paper.
.uns[‘params_fig7a’] is parameters used as input to get ‘solution_7a’.
.uns[‘params_fig7b’] is parameters used as input to get ‘solution_7b’.
.var includes information of the bulk samples.
- Return type