scphylo.pp.consensus_combine

scphylo.pp.consensus_combine(df)

Combine cells in genotype matrix.

This function combines the replicates or cells that have the same origin prior to running Trisicell-Cons. The replicates or cells that are supposed to be merged must be designated with _. For instance:

input: {{Cell1}_{ID1}, {Cell1}_{ID2}, {Cell2}_{ID1}, {Cell2}_{ID2}}.

output: {{Cell1}, {Cell2}}.

Parameters:

df (pandas.DataFrame) – The input genotype matrix in conflict-free format.

Returns:

The combine genotype matrix.

Return type:

pandas.DataFrame