scphylo.datasets.acute_lymphocytic_leukemia2#

scphylo.datasets.acute_lymphocytic_leukemia2()[source]#

Human Acute Lymphocytic Leukemia dataset (Patient 2).

This dataset was introduced in [Gawad_2014] and was used in:

[PhISCS] Figure 9.
[B-SCITE] in Figure 6.
[infSCITE] Figure S17.
[Phyolin] Table 2.

The size is n_cells × n_muts = 102 × 16

Returns

An anndata in which .X is the input noisy.

.layers[‘solution_fig9’] is the solution presented in Figure 9 of PhISCS
paper.

.uns[‘params_fig9’] is parameters used as input to get ‘solution_fig9’.

.var includes information of the bulk samples.

Return type

anndata.AnnData