scphylo.io.read#
- scphylo.io.read(filepath)[source]#
Read genotype matrix and read-count matrix.
The genotype matrix must be in the in format of
pandas.DataFrame
The read-count matrix must be in the format ofanndata.AnnData
.
Examples#
Comparing two trees by Ancestor-Descendent
Comparing two trees by Ancestor-Descendent
Comparing two trees by CASet
Comparing two trees by DISC
Comparing two trees by Different-Lineage
Comparing two trees by Different-Lineage
Comparing two trees by Genotype-Similarity
Comparing two trees by Genotype-Similarity
Comparing two trees by MLTD
Comparing two trees by MP3
Comparing two trees by Robinson-Foulds
Comparing two trees by Robinson-Foulds
Comparing two trees by TPTED
Visualizing a tree in clonal format
Visualizing a tree in clonal format