scphylo.tl.tpted#
- scphylo.tl.tpted(df_grnd, df_sol)[source]#
Tumor phylogeny tree edit distance measure (TPTED).
This measure was introduced in [PhISCS]. This implementation uses APTED.
- Parameters
df_grnd¶ (
pandas.DataFrame) – The first genotype matrix (e.g. ground truth) This matrix must be conflict-free.df_sol¶ (
pandas.DataFrame) – The second genotype matrix (e.g. solution/inferred) This matrix must be conflict-free.
- Returns
Similarity out of one.
- Return type
