scphylo.datasets.muscle_invasive_bladder

scphylo.datasets.muscle_invasive_bladder()

Muscle Invasive Bladder Cancer.

This dataset was introduced in [Li_2012] and was used in:

• [OncoNEM] Figure 6B.

The size is n_cells × n_muts = 44 × 443

Returns

An anndata in which .X is the input noisy.

• .uns[‘params_onconem’] is parameters inferred by OncoNEM.

Return type

anndata.AnnData

Examples

>>> adata = scp.datasets.muscle_invasive_bladder()
>>> df_in = adata.to_df()