scphylo.ul.hclustering

scphylo.ul.hclustering(df, metric='l1', method='ward', return_dist=False)

Hierarchical clustering.

Parameters

• df (pandas.DataFrame) – The genotype matrix.

• metric (str, optional) –

  The metric option. Can be:

  • l1

  • cosine

• method (str, optional) – The method for the hierarchical clustering, by default “ward”

Returns

A dictionary in which keys are the number of clusters and values are the cluster labels for each item.

Return type

dict