scphylo.datasets.myeloproliferative_neoplasms18

scphylo.datasets.myeloproliferative_neoplasms18()

JAK2-Negative Myeloproliferative Neoplasm.

This dataset was introduced in [Hou_2012] and was used in:

• [SCITE] Figure S2, S3 and S4.

• [Kim_2014] Figure 1.

• [infSCITE] Figure S13.

• [gpps] Figure 2.

The size is n_cells × n_muts = 58 × 18

Returns

An anndata in which .X is the input noisy.

• .uns[‘params_scite’] is parameters inferred by SCITE.

Return type

anndata.AnnData

Notes

The original dataset contains 712 mutations but 18 ones were considered as cancer related mutations from the full data.