scphylo.tl.dl#
- scphylo.tl.dl(df_grnd, df_sol)[source]#
Different-lineage accuracy.
For each pair of mutations in ground truth tree that are in different-lineages relation we check whether the same relationship is preserved in the inferred tree.
This measure was introduced in [B-SCITE].
- Parameters
df_grnd¶ (
pandas.DataFrame) – The first genotype matrix (e.g. ground truth) This matrix must be conflict-free.df_sol¶ (
pandas.DataFrame) – The second genotype matrix (e.g. solution/inferred) This matrix must be conflict-free.
- Returns
Similarity out of one.
- Return type
